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Thread: Genomes from Late Iron Age Britain
Post: RE: Genomes from Late Iron Age Britain
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ArmandoR1b Wrote: (11-24-2024, 03:21 AM)
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Villanovan Wrote: (11-21-2024, 03:37 PM)
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ArmandoR1b Wrote: (11-21-2024, 12:03 AM)
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FTDNA has already accepted at least 2 specimens that have are der... |
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Villanovan |
Ancient (aDNA)
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31 |
3,308 |
11-24-2024, 07:11 PM |
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Thread: Genomes from Late Iron Age Britain
Post: RE: Genomes from Late Iron Age Britain
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ArmandoR1b Wrote: (11-21-2024, 12:03 AM)
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Villanovan Wrote: (11-20-2024, 02:09 PM)
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ArmandoR1b Wrote: (11-20-2024, 09:55 AM)
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WBK107 is also derived for L478/PF6403 at the R-L23 level. No-cal... |
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Villanovan |
Ancient (aDNA)
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31 |
3,308 |
11-21-2024, 03:37 PM |
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Thread: Genomes from Late Iron Age Britain
Post: RE: Genomes from Late Iron Age Britain
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Telemachus Wrote: (11-20-2024, 03:46 PM)
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In addition to those on Villanovan's list, FTDNA cautiously called it a G-L497, but I16327 (~800-550 BCE) from the 'East Hallstattkreis' (Czech Republic) v... |
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Villanovan |
Ancient (aDNA)
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31 |
3,308 |
11-20-2024, 05:41 PM |
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Thread: Genomes from Late Iron Age Britain
Post: RE: Genomes from Late Iron Age Britain
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corrigendum Wrote: (11-19-2024, 09:24 PM)
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Pre-medieval G-CTS4803 samples:
Code:
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Croatia_Mursa_Roman.SG:R3655.SG__AD_221__Cov_42.85%,0.119514,0.148267,0.038843,-0.007106,0.048932,-0.00502,... |
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Villanovan |
Ancient (aDNA)
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31 |
3,308 |
11-20-2024, 02:39 PM |
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Thread: Genomes from Late Iron Age Britain
Post: RE: Genomes from Late Iron Age Britain
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ArmandoR1b Wrote: (11-20-2024, 09:55 AM)
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Villanovan Wrote: (11-19-2024, 07:38 PM)
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Dewsloth Wrote: (11-19-2024, 07:31 PM)
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Is WBK107 female?
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WBK107 is R-M269.
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WBK107 is also deriv... |
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Villanovan |
Ancient (aDNA)
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31 |
3,308 |
11-20-2024, 02:09 PM |
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Thread: Genomes from Late Iron Age Britain
Post: RE: Genomes from Late Iron Age Britain
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Dewsloth Wrote: (11-19-2024, 07:31 PM)
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Pribislav Wrote: (11-18-2024, 04:36 PM)
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Spreadsheet with Y-haplogroups:
Durotrigian aDNA (https://docs.google.com/spreadsheets/d/1Oe-gmSzE9iuYaubceH9-... |
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Villanovan |
Ancient (aDNA)
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31 |
3,308 |
11-19-2024, 07:38 PM |
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Thread: Genomes from Late Iron Age Britain
Post: RE: Genomes from Late Iron Age Britain
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Pribislav Wrote: (11-18-2024, 04:36 PM)
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Spreadsheet with Y-haplogroups:
Durotrigian aDNA (https://docs.google.com/spreadsheets/d/1Oe-gmSzE9iuYaubceH9-P9ojxvGH95m1/edit?usp=sharing&ouid=11512713... |
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Villanovan |
Ancient (aDNA)
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31 |
3,308 |
11-19-2024, 12:20 AM |
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Thread: "...Eastern Italian Alps from Mesolithic to Middle Bronze Age..."
Post: RE: "...Eastern Italian Alps from Mesolithic to Mi...
| Chris, not sure if she's involved either, but part of the samples and/or sites may coincide, that is, those locations in the dissertation may provide clues about the locations in the new paper, hence ... |
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Villanovan |
Ancient (aDNA)
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73 |
7,426 |
08-28-2024, 12:58 PM |
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Thread: "...Eastern Italian Alps from Mesolithic to Middle Bronze Age..."
Post: RE: "...Eastern Italian Alps from Mesolithic to Mi...
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J Man Wrote: (08-27-2024, 02:53 PM)
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It will be very interesting to learn which site the Neolithic J2a sample comes from as well.
ISE01; Italy_Neolithic; J2a2-PF5008>L581>Z37823>PF5000 (xY29677,... |
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Villanovan |
Ancient (aDNA)
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73 |
7,426 |
08-27-2024, 05:28 PM |
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Thread: "...Eastern Italian Alps from Mesolithic to Middle Bronze Age..."
Post: RE: "...Eastern Italian Alps from Mesolithic to Mi...
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asquecco Wrote: (07-02-2024, 07:27 AM)
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Villanovan Wrote: (07-02-2024, 02:00 AM)
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Mittnik et al. (2016) provides a R script (by Wang) for sex determination.
https://journals.plos.org/plosone/ar... |
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Villanovan |
Ancient (aDNA)
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73 |
7,426 |
07-02-2024, 11:26 AM |
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Thread: "...Eastern Italian Alps from Mesolithic to Middle Bronze Age..."
Post: RE: "...Eastern Italian Alps from Mesolithic to Mi...
| Mittnik et al. (2016) provides a R script (by Wang) for sex determination.
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0163019
The script using Rx approach may be found here:... |
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Villanovan |
Ancient (aDNA)
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73 |
7,426 |
07-02-2024, 02:00 AM |
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Thread: "...Eastern Italian Alps from Mesolithic to Middle Bronze Age..."
Post: RE: "...Eastern Italian Alps from Mesolithic to Mi...
| We should have splits under G-L497.
Curiously, no G-Z726 (upstream G-CTS4803 and G-Z16775) among the G-L497 samples from this paper. G-Z726 (and especially G-CTS4803) would be the most frequent und... |
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Villanovan |
Ancient (aDNA)
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73 |
7,426 |
06-29-2024, 03:03 PM |
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Thread: "...Eastern Italian Alps from Mesolithic to Middle Bronze Age..."
Post: RE: "...Eastern Italian Alps from Mesolithic to Mi...
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La Tene Wrote: (06-15-2024, 03:12 PM)
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Just a wild guess
Mesolitic?
Quote:
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eastern_alps:3130,0.132035,0.113739,0.189692,0.185726,0.135102,0.054384,0.011281,0.042229,0.07731,-0.000364,-0.0... |
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Villanovan |
Ancient (aDNA)
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73 |
7,426 |
06-29-2024, 10:33 AM |
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Thread: "...Eastern Italian Alps from Mesolithic to Middle Bronze Age..."
Post: RE: "...Eastern Italian Alps from Mesolithic to Mi...
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ArmandoR1b Wrote: (06-29-2024, 03:37 AM)
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Villanovan Wrote: (06-26-2024, 01:56 AM)
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I left the first one running in one of my laptops. Time consuming, indeed. It'd have been much easier if they ... |
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Villanovan |
Ancient (aDNA)
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73 |
7,426 |
06-29-2024, 10:31 AM |
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Thread: "...Eastern Italian Alps from Mesolithic to Middle Bronze Age..."
Post: RE: "...Eastern Italian Alps from Mesolithic to Mi...
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Pribislav Wrote: (06-29-2024, 12:05 AM)
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Could you post the list so we can know which samples are male?
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The Gs (with impressive diversity under G-L497):
ROM301, ROM305, ROM308, ROM309
STE01, S... |
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Villanovan |
Ancient (aDNA)
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73 |
7,426 |
06-29-2024, 01:19 AM |
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Thread: "...Eastern Italian Alps from Mesolithic to Middle Bronze Age..."
Post: RE: "...Eastern Italian Alps from Mesolithic to Mi...
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J Man Wrote: (06-28-2024, 09:52 PM)
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asquecco Wrote: (06-28-2024, 09:32 PM)
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I aligned the first 60 genomes and then I ran Yleaf with minimum number of reads=2.
The main 3 groups predicted by t... |
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Villanovan |
Ancient (aDNA)
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73 |
7,426 |
06-29-2024, 01:13 AM |
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Thread: "...Eastern Italian Alps from Mesolithic to Middle Bronze Age..."
Post: RE: "...Eastern Italian Alps from Mesolithic to Mi...
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Villanovan Wrote: (06-26-2024, 01:09 PM)
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asquecco Wrote: (06-26-2024, 10:55 AM)
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I'm not an expert in this type of analysis but, to allign on the Galaxy server the FASTQ files of the first 10 g... |
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Villanovan |
Ancient (aDNA)
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73 |
7,426 |
06-27-2024, 09:17 PM |
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Thread: "...Eastern Italian Alps from Mesolithic to Middle Bronze Age..."
Post: RE: "...Eastern Italian Alps from Mesolithic to Mi...
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asquecco Wrote: (06-26-2024, 10:55 AM)
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I'm not an expert in this type of analysis but, to allign on the Galaxy server the FASTQ files of the first 10 genomes, I used this tutorial:
https://www.yo... |
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Villanovan |
Ancient (aDNA)
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73 |
7,426 |
06-26-2024, 01:09 PM |
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Thread: "...Eastern Italian Alps from Mesolithic to Middle Bronze Age..."
Post: RE: "...Eastern Italian Alps from Mesolithic to Mi...
| I left the first one running in one of my laptops. Time consuming, indeed. It'd have been much easier if they had provided mapped BAMs.
As I've downloaded the uBAM, I had to convert it back to FASTQ ... |
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Villanovan |
Ancient (aDNA)
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73 |
7,426 |
06-26-2024, 01:56 AM |
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Thread: G-Z6488
Post: RE: G-Z6488
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Capsian20 Wrote: (04-03-2024, 08:00 PM)
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pelop Wrote: (04-03-2024, 05:36 PM)
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Logomaco Wrote: (04-03-2024, 02:13 PM)
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I’m from southern calabria, my male lineage is from the grecophone area, ... |
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Villanovan |
G2a-P15
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5 |
565 |
04-11-2024, 07:43 PM |
