(09-06-2024, 11:00 AM)Capsian20 Wrote: Hello everybody
its interesting to find Haplogroup U6a7b1 in South Asia, as there is 1 sample from the Kalash people in North Pakistan
I would like to ask, during which period did this subclade migrate to South Asia?
source this study
https://www.sciencedirect.com/science/article/pii/S221454002100044X

(09-08-2024, 05:30 PM)miquirumba Wrote:

(09-06-2024, 11:00 AM)Capsian20 Wrote: Hello everybody
its interesting to find Haplogroup U6a7b1 in South Asia, as there is 1 sample from the Kalash people in North Pakistan
I would like to ask, during which period did this subclade migrate to South Asia?
source this study
https://www.sciencedirect.com/science/article/pii/S221454002100044X

in the paper's table

U6a7b1 7 C16190d, A16202d C112d, T168TC, A175d, T195C, C198T Near East and Africa

I didn't find no sample U6a7b1 from Near East. 
a lot from France, one ancestral U6a7b* from Portugal (surely Maghreb descendant)
You'd run BLAST with all U6a7b1 Genbank samples to detect extra variants or different deletions

(09-08-2024, 07:17 PM)Capsian20 Wrote:

(09-08-2024, 05:30 PM)miquirumba Wrote:

(09-06-2024, 11:00 AM)Capsian20 Wrote: Hello everybody
its interesting to find Haplogroup U6a7b1 in South Asia, as there is 1 sample from the Kalash people in North Pakistan
I would like to ask, during which period did this subclade migrate to South Asia?
source this study
https://www.sciencedirect.com/science/article/pii/S221454002100044X

in the paper's table

U6a7b1 7 C16190d, A16202d C112d, T168TC, A175d, T195C, C198T Near East and Africa

I didn't find no sample U6a7b1 from Near East. 
a lot from France, one ancestral U6a7b* from Portugal (surely Maghreb descendant)
You'd run BLAST with all U6a7b1 Genbank samples to detect extra variants or different deletions

I see this its different SNPs , I dont find this sample in GenBank but i use google sheets to comparison between samples in Genbank and this sample Kalash anyway i trying to find all variants this sample Kalash

mtDNA U6a7

(09-08-2024, 10:20 PM)miquirumba Wrote:

(09-08-2024, 07:17 PM)Capsian20 Wrote:

(09-08-2024, 05:30 PM)miquirumba Wrote: in the paper's table

U6a7b1 7 C16190d, A16202d C112d, T168TC, A175d, T195C, C198T Near East and Africa

I didn't find no sample U6a7b1 from Near East. 
a lot from France, one ancestral U6a7b* from Portugal (surely Maghreb descendant)
You'd run BLAST with all U6a7b1 Genbank samples to detect extra variants or different deletions

I see this its different SNPs , I dont find this sample in GenBank but i use google sheets to comparison between samples in Genbank and this sample Kalash anyway i trying to find all variants this sample Kalash

mtDNA U6a7

no match. I also checked Ian logan haplogroup sheet. Nobody has reported those rare INDELs in Control Region. 195C and 198T are detected in all U6a7b samples (except  a few ancient  no calls). We cannot know the haplotype because authors didn't share full sequence results, i am sure there are 1 or 2 variants in Coding Region

(09-08-2024, 10:59 PM)Capsian20 Wrote:

(09-08-2024, 10:20 PM)miquirumba Wrote:

(09-08-2024, 07:17 PM)Capsian20 Wrote: I see this its different SNPs , I dont find this sample in GenBank but i use google sheets to comparison between samples in Genbank and this sample Kalash anyway i trying to find all variants this sample Kalash

mtDNA U6a7

no match. I also checked Ian logan haplogroup sheet. Nobody has reported those rare INDELs in Control Region. 195C and 198T are detected in all U6a7b samples (except  a few ancient  no calls). We cannot know the haplotype because authors didn't share full sequence results, i am sure there are 1 or 2 variants in Coding Region

This interesting do you think this sample it possible has new subclade (basel) under U6a7b1 
but which period did this subclade migration to south Asia ? 
I think possible 2000~4000 years ?