Problem with v54.1.p1_1240k_public.geno

[Jalisciense]

I am using Linux (OpenSUSE) and I have installed qpAdm, but I have this problem, why my .geno file is different? I cannot even open it, I changed the properties, I delated it and download again here: https://reich.hms.harvard.edu/allen...le...t-dna-data

And nothing! Do you know why is happening that and how to fix it?

[Genetics189291]

You need to transfer those files to your bin folder. Also paste a screen shot of how your parqpadm file is set up

[Jalisciense]

You need to transfer those files to your bin folder. Also paste aven i screen shot of how your parqpadm file is set up

But moving the 4 files to the bin folder would solve the problem? I mean, even if it seems that the OpenSuse is unable to recognize the .geno file like the others 3 (1240k) files?

I haven't changed the parqpadm parameters because I tried to do the qpfstats first.

[Genetics189291]

You need to transfer those files to your bin folder. Also paste aven i screen shot of how your parqpadm file is set up

But moving the 4 files to the bin folder would solve the problem? I mean, even if it seems that the OpenSuse is unable to recognize the .geno file like the others 3 (1240k) files?

I haven't changed the parqpadm parameters because I tried to do the qpfstats first.

Remove the first line in s1 it will be the file name etc v54.1.p1_1240k_public then for ind snp and geno paste the name there as well

[Jalisciense]

You need to transfer those files to your bin folder. Also paste aven i screen shot of how your parqpadm file is set up

But moving the 4 files to the bin folder would solve the problem? I mean, even if it seems that the OpenSuse is unable to recognize the .geno file like the others 3 (1240k) files?

I haven't changed the parqpadm parameters because I tried to do the qpfstats first.

Remove the first line in s1 it will be the file name etc v54.1.p1_1240k_public then for ind snp and geno paste the name there as well

[Genetics189291]

But moving the 4 files to the bin folder would solve the problem? I mean, even if it seems that the OpenSuse is unable to recognize the .geno file like the others 3 (1240k) files?

I haven't changed the parqpadm parameters because I tried to do the qpfstats first.

Remove the first line in s1 it will be the file name etc v54.1.p1_1240k_public then for ind snp and geno paste the name there as well

Get rid of the dir line, also remove dir from the .ind .geno .snp line

[Jalisciense]

Remove the first line in s1 it will be the file name etc v54.1.p1_1240k_public then for ind snp and geno paste the name there as well

Get rid of the dir line, also remove dir from the .ind .geno .snp line

[Genetics189291]

Get rid of the dir line, also remove dir from the .ind .geno .snp line

Now that’s all fine to go you just need to test it out now go to right1 and choose your right populations these are your out groups always have mbuti.DG as the first outgroup otherwise it won’t work

[Jalisciense]

Get rid of the dir line, also remove dir from the .ind .geno .snp line

Now that’s all fine to go you just need to test it out now go to right1 and choose your right populations these are your out groups always have mbuti.DG as the first outgroup otherwise it won’t work

I know this model is bad and not gonna pass, but It does not matter for now, I used the same populations (Except Tarim_EMBA1 because I did not find it) of that guy from the link of a guide you sent me days ago.





Now what I do?

[Genetics189291]

Now that’s all fine to go you just need to test it out now go to right1 and choose your right populations these are your out groups always have mbuti.DG as the first outgroup otherwise it won’t work

I know this model is bad and not gonna pass, but It does not matter for now, I used the same populations (Except Tarim_EMBA1 because I did not find it) of that guy from the link of a guide you sent me days ago.





Now what I do?

Go to your terminal type in cd bin and then type this in qpAdm -p parqpAdm >p

[Jalisciense]

Now that’s all fine to go you just need to test it out now go to right1 and choose your right populations these are your out groups always have mbuti.DG as the first outgroup otherwise it won’t work

I know this model is bad and not gonna pass, but It does not matter for now, I used the same populations (Except Tarim_EMBA1 because I did not find it) of that guy from the link of a guide you sent me days ago.





Now what I do?

Go to your terminal type in cd bin and then type this in qpAdm -p parqpAdm >p

[Genetics189291]

I know this model is bad and not gonna pass, but It does not matter for now, I used the same populations (Except Tarim_EMBA1 because I did not find it) of that guy from the link of a guide you sent me days ago.





Now what I do?

Go to your terminal type in cd bin and then type this in qpAdm -p parqpAdm >p

Do you have enough ram allocated, also use terminal super user not konsole

[Jalisciense]

Go to your terminal type in cd bin and then type this in qpAdm -p parqpAdm >p

Do you have enough ram allocated, also use terminal super user not konsole

I think so bro, RAM: 5187 MB, processors/CPU: 2 and using the Terminal Super User Mode:

[Genetics189291]

Do you have enough ram allocated, also use terminal super user not konsole

I think so bro, RAM: 5187 MB, processors/CPU: 2 and using the Terminal Super User Mode:

That’s strange try using the other and you need to give more ram you can adjust it in the settings

[Jalisciense]

Do you have enough ram allocated, also use terminal super user not konsole

I think so bro, RAM: 5187 MB, processors/CPU: 2 and using the Terminal Super User Mode:

That’s strange try using the other and you need to give more ram you can adjust it in the settings

Yes bro, because qpAdm seems to be good installed:



And this is my bin folder:



Or do you see something wrong there?

More RAM, well, I could try it but beyond that is in orange-red, still I am going to give it 7051 MB (The maximum that the virtual machine can give me the changes, because I cannot more than that, the VM don't let me save the changes).